Following is a list of publications stemming directly from research out of the center, or that used technology developed at the center.  If you wish to cite our center and it’s funding grant in your publication, please use the guidelines.

Fig. 1 AI-Based Automated Lipomatous Tumor Segmentation in MR Images: Ensemble Solution to Heterogeneous Data

Unsupervised deep learning framework for data-driven gating in positron emission tomography.
Tiantian Li, Zhaoheng Xie, Wenyuan Qi, Evren Asma, Jinyi Qi
Medical Physics. 2023.
DOI: 10.1002/mp.16642

Unsupervised deep learning framework for data-driven gating in positron emission tomography Fi. 1

AI-Based Automated Lipomatous Tumor Segmentation in MR Images: Ensemble Solution to Heterogeneous Data
Liu, CC., Abdelhafez, Y.G., Yap, S.P. et al.
J Digit Imaging. 36, 1049–1059 (2023).
DOI: 10.1007/s10278-023-00785-1


Mingjun Zhao OPtica 2023 Jan Publication

Interferometric diffusing wave spectroscopy imaging with an electronically variable time-of-flight filter
Zhao M, Zhou W, Aparanji S, Mazumder D, Srinivasan VJ
Optica. 2023 Jan 20;10(1):42-52
DOI: 10.1364/OPTICA.472471

Xingde Li Jan 23 Biomedical Optics Express Publication

Deep learning-based optical coherence tomography image analysis of human brain cancer
Wang N, Lee CY, Park HC, Nauen DW, Chaichana KL, Quinones-Hinojosa A, Bettegowda C, Li X
Biomedical Optics Express. 2023 Jan 1;14(1):81-8. 
DOI: 10.1364/BOE.477311

Silvia Journal of Biophotonics Dec22 Publication

Intraoperative detection of IDH-mutant glioma using fluorescence lifetime imaging

Silvia Noble Anbunesan, Alba Alfonso-Garcia, Xiangnan Zhou, Julien Bec, Han Sung Lee, Lee-Way Jin, Orin Bloch, Laura Marcu

Journal of Biophotonics. 2023 Apr;16(4):e202200291.  Epub 2022 Dec 23.

DOI: 10.1002/jbio.202200291        PMID:36510639

Nir Pillar Expert Review of Molecular Diagnostics Nov 22 Publication

Virtual tissue staining in pathology using machine learning
Pillar N, Ozcan A.
Expert Review of Molecular Diagnostics. 2022 Nov 2.
DOI: 10.1080/14737159.2022.2153040        PMID: 3644048

Yijie Zhang Intelligent Computing Oct 22 Publication

Virtual staining of defocused autofluorescence images of unlabeled tissue using deep neural networks
Zhang Y, Huang L, Liu T, Cheng K, de Haan K, Li Y, Bai B, Ozcan A
Intelligent Computing. 2022 Oct 27
DOI: 10.34133/2022/9818965

Bijie Bai BME Frontiers Oct 22 Publication

Label-free virtual HER2 immunohistochemical staining of breast tissue using deep learning
Bai B, Wang H, Li Y, de Haan K, Colonnese F, Wan Y, Zuo J, Doan NB, Zhang X, Zhang Y, Li J, Yang X, Dong W, Darrow M, Kamangar E, Lee H, Rivenson Y, Ozcan A.
BME Frontiers. 2022 Oct 26; 2022
DOI: 10.34133/2022/9786242

Wenjun Zhou Neurophotonics Oct 22 Publication

Interferometric diffuse optics: recent advances and future outlook
Zhou W, Zhao M, Srinivasan VJ
Neurophotonics. 2022 Oct 22;10(1):013502
DOI:10.1117/1.NPh.10.1.013502         PMCID: PMC9587754

David Bauer IEEE TVCG 2022 Sep Publication

FoVolNet: Fast Volume Rendering using Foveated Deep Neural Networks
Bauer D, Wu Q, Ma KL
IEEE Transactions on Visualization and Computer Graphics. 2022 Sep 26;29(1):515-25
DOI: 10.1109/TVCG.2022.3209498        PMID: 36155446        

Hasan Ayaz Neurophotonics 2022 Aug Publication

Optical imaging and spectroscopy for the study of the human brain: status report
Ayaz H, Baker WB, Blaney G, Boas DA, Bortfeld H, Brady K, Brake J, Brigadoi S, Buckley EM, Carp SA, Cooper RJ, Cowdrick KR, Culver JP, Dan I, et al
Neurophotonics. 2022 Aug;9(S2):S24001
DOI: 10.1117/1.NPh.9.S2.S24001        PMCID: PMC9424749

Xilin Yang ACS Photonics 2022 Aug Publication

Virtual stain transfer in histology via cascaded deep neural networks
Yang X, Bai B, Zhang Y, Li Y, de Haan K, Liu T, Ozcan A
ACS Photonics. 2022 Aug 17;9(9):3134-43
DOI: 10.1021/acsphotonics.2c00932

Cai Li Journal of Biomedical Optics July 22 Publication

Dual-modality fluorescence lifetime imaging-optical coherence tomography intravascular catheter system with freeform catheter optics
Li C, Bec J, Zhou X, Marcu L.
Journal of Biomedical Optics. 2022 Jul;27(7):076005
DOI: 10.1117/1.JBO.27.7.076005        PMCID: PMC9300477

Cesar Bartolo-Perez Optics Express May 22 Publication

Engineering the gain and bandwidth in avalanche photodetectors
Bartolo-Perez C, Ahamed A, Mayet AS, Rawat A, McPhillips L, Ghandiparsi S, Bec J, Ariño-Estrada G, Cherry S, Wang SY, Marcu L, Islam S
Optics Express. 2022 May 9;30(10):16873-82 
DOI: 10.1364/OE.446507        PMCID: PMC9363021

Brent Weyers Head Neck May 2022 Publication

Intraoperative delineation of p16+ oropharyngeal carcinoma of unknown primary origin with fluorescence lifetime imaging: Preliminary report
Weyers BW, Birkeland AC, Marsden MA, Tam A, Bec J, Frusciante RP, Gui D, Bewley AF, Abouyared M, Marcu L, Farwell DG
Head & Neck. 2022 May 5
DOI: 10.1002/hed.27078        PMID: 35511208

Alba Alfonso Molecules Feb 2022 Publication

Assessment of Murine Colon Inflammation Using Intraluminal Fluorescence Lifetime Imaging
Alfonso-Garcia A, Cevallos SA, Lee JY, Li C, Bec J, Bäumler AJ, Marcu L
Molecules. 2022 Feb 15;27(4):1317
DOI: 10.3390/molecules27041317       PMCID: PMC8875403

Alba Alfonso Journal of Biomedical Optics Feb 2022 Publication

First in patient assessment of brain tumor infiltrative margins using simultaneous time-resolved measurements of 5-ALA-induced PpIX fluorescence and tissue autofluorescence
Alfonso-García A, Zhou X, Bec J, Anbunesan SN, Fereidouni F, Jin LW, Lee HS, Bloch O, Marcu L
Journal of biomedical optics. 2022 Feb;27(2):020501
DOI: 10.1117/1.JBO.27.2.020501        PMCID: PMC8809358

Oybek Kholiqov Optics Letters 2022 Jan Publication

Scanning interferometric near-infrared spectroscopy
Kholiqov O, Zhou W, Zhang T, Zhao M, Ghandiparsi S, Srinivasan VJ
Optics Letters. 2021 Sep 15;46(18):4498-501
DOI: 10.1364/OL.427746         PMCID: PMC9281567